SAMUEL DAVID PERLI
Dissecting & Engineering Biology
I am a postdoctoral fellow working with Prof. Shinya Yamanaka at Gladstone Institutes and UCSF on developing computational and molecular tools for dissecting and engineering Biology as well as developing next generation applications of pluripotent stem cells. I have previously worked with Prof. Timothy Lu @ MIT, where I obtained my PhD. Prior to that, I earned a MS in Computer Science from MIT working with Prof. Dina Katabi as a Presidential Fellow. I finished my Bachelor's in Electrical Engineering @ IIT Madras and was awarded the Institute medal for best academic record in the department. I enjoy playing the guitar, outdoors and cooking. I also teach at Hue.
All of Biology is dictated by the fundamentally digital information encoded within nucleic acids. Having been extensively trained as a Computer Scientist and a Molecular Biologist, I aspire to integrate computational and molecular approaches towards building tools for dissecting and engineering biological systems
PUBLICATIONS
CRITICAL ROLES OF TRANSLATION INITIATION AND RNA URIDYLATION IN ENDOGENOUS RETROVIRAL EXPRESSION AND NEURAL DIFFERENTIATION IN HUMAN PLURIPOTENT STEM CELLS
Kazutoshi Takahashi, Daeun Jeong, Songnan Wang, Megumi Narita, Xuemei Jin, Samuel D. Perli, Bruce Conklin, Shinya Yamanaka
Cell Reports, 2020
Samuel D. Perli and Timothy K. Lu
ACM NanoCom, 2017
Samuel D. Perli, Cheryl H. Cui and Timothy K. Lu
Science, 2016
Alan S L Wong, Gigi C G Choi, Cheryl H Cui, Gabriela Pregernig, Pamela Milani, Miriam Adam, Samuel D Perli, Samuel W Kazer, Aleth Gaillard, Mario Hermann, Alex K Shalek, Ernest Fraenkel, Timothy K Lu
Proceedings of the National Academy of Sciences, U.S.A, 2016
Kevin C. Ma, Samuel D. Perli and Timothy K. Lu
Journal of Molecular Biology, 2016
Samuel D. Perli and Timothy K. Lu
ACM NanoCom, 2016
Lior Nissim*, Samuel D. Perli*, Alexandra Fridkin, Pablo Perez-Pinera, and Timothy K. Lu
Molecular Cell, May 2014
Featured as the Cover article
Fahim Farzadfard, Samuel D. Perli, and Timothy K. Lu
ACS Synthetic Biology, August 2013
Kristjan E. Kaseniit, Samuel D. Perli and Timothy K. Lu
Proc. of the IEEE Biomedical Circuits and Systems Conference (BioCAS), 2011
Samuel D. Perli, Nabeel Ahmed and Dina katabi
ACM MobiCom, 2010
Samuel D. Perli, Nabeel Ahmed and Dina Katabi
ACM SIGCOMM, 2010
Won the second place in the ACM, Student Research Competition
Shyamnath Gollakota, Samuel D. Perli and Dina Katabi
ACM SIGCOMM, 2009
P. Samuel David and Anurag Kumar
IEEE COMSWARE, 2008
PATENTS
SELF-TARGETING GENOME EDITING SYSTEM
Timothy K. Lu, Samuel D. Perli, Cheryl H. Cui.
PCT/US2016/032348 WO 2016/183438
METHODS AND COMPOSITIONS FOR THE PRODUCTION OF GUIDE RNA
Timothy K. Lu, Lior Nissim, Samuel D. Perli
PCT/US2015/024196 WO/2015/153940
METHOD AND SYSTEM FOR CODING INFORMATION ON A ROADWAY SURFACE SUBJECT TO MOTION BLUR
Raymond Yim, Samuel David Perli, Fatih Porikli, Jinyun Zhang
USPTO #8,378,799
RESUME
CONTACT ME
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